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Q J Med 2001; 94: 237-246
© 2001 Association of Physicians


Review

Tumour necrosis factor polymorphisms in rheumatic diseases

M. Field

From the Centre For Rheumatic Diseases, University Department of Medicine, Glasgow Royal Infirmary, Glasgow, UK


    Introduction
 Top
 Introduction
 Polymorphisms in the TNF...
 Function of the polymorphisms...
 Conclusions
 References
 
Tumour necrosis factor {alpha} (TNF{alpha}) is a pro-inflammatory cytokine that plays a key role in the pathogenesis of many infections and inflammatory diseases. 1 It was identified through its ability to lyse tumour cells,2 but in retrospect this ability was first noted nearly 100 years ago, when Coley's toxins were shown to destroy sarcoma cells. TNF{alpha} is now recognized to be involved in stimulation of cytokine production, enhancing expression of adhesion molecules and neutrophil activation, and it is also a co-stimulator for T-cell activation and antibody production by B cells. 1 As such, it contributes to the regulation of normal homeostasis, as well as playing an important role in inflammation.

TNF{alpha} belongs to a family of proteins that includes lymphotoxin {alpha} (LT{alpha}, previously known as TNFß) and lymphotoxin ß (LTß). Although T cells can produce TNF{alpha}, activated monocytes (macrophages) are the major source of TNF{alpha}, which is synthesized as a 20 kDa pro-protein and cleaved by TNF{alpha} converting enzyme (TACE) to a 17 kDa monomer. Under physiological conditions, TNF{alpha} circulates as a stable cone-shaped homotrimer3 that mediates its effects by binding to two receptor molecules TNF RI (p55) and TNF RII (p75).1 Genes for these receptors also contain polymorphic variants, but these are beyond the scope of this review.

By the mid 1980s, the TNF{alpha} protein had been purified, and its gene cloned, sequenced and mapped to the MHC Class III region on the short arm of chromosome six.4 The TNF{alpha} gene is tandemly arranged with that for LT{alpha} and LTß, within the ‘TNF locus’, a 7 kb region 250 kb centromeric to the HLA B locus, 400 kb telomeric to the C2/BF locus and ~1000 kb from the MHC Class II DR genes (Figure 1Go). This genetic region is important to rheumatic diseases, as HLA Class I B27 antigen is associated with ankylosing spondylitis (AS), and MHC Class II genes are associated with rheumatoid arthritis (HLA DR1 and DR4) and systemic lupus erythematosus (DR2 and DR3).



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Figure 1. Diagrammatic representation of the main regions of the MHC. Highlighted below is the ‘TNF locus’ detail together together with some of the polymorphic sites that are known within the TNF locus. Those defined by RFLP are highlighted above the line whilst the microsatellites are delineated above.

 
Moreover, TNF{alpha} is now recognized to contribute to the pathogenesis of joint disease. The successful therapeutic use of monoclonal antibodies against TNF{alpha} in RA clinical trials confirms this observation, and implies that the genes within the TNF locus that could regulate its production may well be important in RA pathogenesis. 5 Similarly, messenger RNA for TNF{alpha} is found in the inflamed sacroiliac joint in patients with ankylosing spondylitis,6 and in macrophages in the inflamed arterial wall in giant-cell arteritis, 7 implying a role for TNF{alpha} in the vasculitides.

The first suggestion that there could be inter-individual variations in TNF{alpha} production came from studies in normal individuals and patients with SLE.8 The presence of HLA-DR2 was associated with lower TNF{alpha} production following stimulation of PBMCs by LPS. This implies that the MHC exerts some genetic control over TNF{alpha} production, and as DR2 is found in SLE patients, particularly those of Afro-Caribbean ethnicity, that an inability to produce TNF{alpha} is important in the development of SLE. Treatment of New Zealand BlackxWhite F1 mice, a murine model of SLE,9 with TNF {alpha} partially improved renal function, and prolonged life, suggesting that even minor stable differences in TNF{alpha} production may have a role to play in the resulting auto-immune disease. Genetic analysis of the MHC Class III region in these mice showed a polymorphism in the TNF {alpha} gene. The NZW parent strain also had this polymorphism, and an impaired ability to produce TNF{alpha}, implying a genetic predisposition to low TNF{alpha} production.

These studies instigated an enquiry into the genetics surrounding the TNF {alpha} gene in humans, to see whether there are markers that predict variations in TNF{alpha} production and thereby development of rheumatic diseases. The development of the polymerase chain reaction (PCR) allowed expansion of unique portions of DNA in vitro so as to provide large amounts of DNA of identical sequence sufficient for further study.

The ‘TNF locus’ has yielded a variety of polymorphic sites, both within the TNF{alpha} gene and in close proximity to it (Figure 1Go). Two forms of polymorphism are described. Firstly, the single-nucleotide polymorphisms (SNPs) are single-base changes that can be found at any site in the DNA, either in the 5' regulatory sequences (promoter) or after the coding region (3' untranslated region), or within the DNA which codes for the gene product. One example of an SNP is the position –308 in the regulatory sequence of the TNF {alpha} promoter (Figure 2Go). Here the base change from the common guanine (80% in Caucasians) to a rarer adenine (20% in Caucasians) alters the DNA sequence such that the DNA restriction enzyme Nco1 can bind and cut the DNA at that position. Analysis by gel electrophoresis identifies the difference between the intact DNA in comparison to that which is cut.10 There are a variety of SNPs in each gene of the ‘TNF locus’. Some are designated by the enzyme used to cut the DNA e.g. LT{alpha} Nco-1.11 By convention, the common allele is designated B*1 and the rarer allele B*2. Other polymorphic sites, usually those where a variety of polymorphic sites have been identified, are defined by the position in the genome from the beginning of the DNA sequence for the gene, e.g. TNF{alpha} –308. Polymorphisms before the start site of the coding sequence for the protein conventionally have a negative designation and those after it a positive one. Some of the frequently quoted SNP sites are shown in Figure 1Go below the line. These include that described at position +386 in the LT{alpha} gene,11 position –238 in the TNF{alpha} promoter12 and +489 13 in the TNF{alpha} gene itself.



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Figure 2. A representative polyacrylamide gel showing the two possible alleles at the –308 site in the promoter region of the TNF{alpha} gene. This gel demonstrates the pattern of bands seen when undigested and digested PCR products are examined after gel electrophoresis. Lane 1 is of the 123bp molecular weight marker. Lanes 3, 7 and 11 are undigested PCR products of 107bp. Lane 4 is an individual homozygous for allele 2 (i.e. no cut site present). Lane 8 is an individual heterozygous for alleles 1 and 2. Lane 12 is an individual homozygous for allele 1 (cut site present).

 
The second polymorphic variant is the DNA microsatellite. These are distributed on all chromosomes throughout the genome. These are repeat sequences (usually the bases C and T) of DNA found in the non-coding introns which are not transcribed into mRNA. They can be of variable length in each individual, a difference that can be detected by gel electrophoresis (Figure 3Go). Although they are not transcribed to make up any part of the messenger RNA, the insertion of microsatellites may alter DNA folding, and have implications for DNA-binding proteins and enzymes that might effect the rates of transcription. Examination of the genes within the ‘TNF locus’ reveals five microsatellites (labelled TNFa, TNFb, ..., TNFe), and their positions in relation to the TNF{alpha} gene are shown in Figure 1Go (above the line). These have variable lengths and are designated according to the number of repeat sequences;14 for example, the TNFc microsatellite has only two variants consisting of 9 or 10 repeats (TNFc1 and TNFc2, respectively), that are represented in 80% and 20% of Caucasian populations, respectively (Figure 3Go). The TNFa microsatellite is the most polymorphic within the TNF locus, having thirteen possible different sizes (TNFa1–13).



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Figure 3. A representative autoradiograph of a polyacrylamide gel showing the two possible TNFc microsatellites. Lanes 15, 16 and 17 show samples of characterized cell lines used as markers for the two possible alleles. Lane 2 is a representative of an individual homozygous for allele 1 (9 repeats). Lane 5 is an individual homozygous for allele 2 (10 repeats). Lane 1 is an example of an individual heterozygous for alleles 1 and 2.

 


    Polymorphisms in the TNF genes in rheumatic diseases
 Top
 Introduction
 Polymorphisms in the TNF...
 Function of the polymorphisms...
 Conclusions
 References
 
Two methods have been used to establish whether certain regions of the chromosomes are implicated in specific diseases. Firstly, there are comparative studies where DNA from twins, one or both of whom are affected by disease, is compared for areas of interest on particular chromosomes, such as has been found for AS.15 These studies scan the genome using microsatellite markers, looking for variations in the pattern that are more commonly represented in the patients. Similar studies have examined multi-case families and compared common regions of DNA in affected and unaffected individuals with AS,16 RA 17 and SLE,18,19 but have not found the MHC Class III region or the ‘TNF locus’ to be specific areas of interest in any of these diseases.

In the second approach, individual genes have been targeted, and because of the interest in TNF{alpha} in the rheumatic diseases, this region of DNA has been well studied. However, its proximity to the MHC raises the possibility that any variations within the TNF locus are present simply because of linkage disequilibrium with the MHC. Studies on cell lines have shown that haplotypes crossing MHC Class I and II, such as HLA A3-B7-DR2-DQ1 and HLA A1-B8-DR3-DQ2, are probably inherited as a group.20 The latter is frequently seen in autoimmune rheumatic diseases (particularly SLE) in the Caucasian population,22 and has been linked with high TNF{alpha} production.9 It is therefore likely that any variations in the Class III region, including the ‘TNF locus’, will also be inherited with this haplotype. Studies to address this issue have confirmed that the microsatellites TNFb3–TNFa2 and the rare polymorphism at TNF–308 (B*2—A allele) are all linked with this extended haplotype.22, 23 These close associations with the MHC necessitate careful study to tease out any direct links with the various TNF polymorphisms in the absence of associations with the extended haplotypes.

Rheumatoid arthritis
The association with the MHC DRß1 alleles that share the amino-acid sequence at position 70–74 in the binding grove of the MHC has been well recognized in Caucasian patients with RA.24, 25 The alleles commonly involved in this association have been HLA-DR1 (DRß1*0101 and 0102), DR4 (DR ß1*0401, 0404 and 0405) contributing approximately 30% to the genetic susceptibility to RA. However, the ‘TNF locus’ could be implicated in predisposition to RA or in disease severity.

The data concerning the role of TNF polymorphisms in RA remain controversial. Two analyses of multi-case families have suggested a link with a susceptibility gene for RA in or near the ‘TNF locus’. 17,26 However, our comparisons failed to demonstrate any link with the LT{alpha} Nco1 polymorphism site.27 More extensive studies comparing RA patients and MHC-matched controls suggested that the TNFa2 and TNFe3 microsatellites are more commonly found in the RA patients.28 This was confirmed in the more closely matched studies where three haplotypes were observed in RA. In the first, the TNFa2 microsatellite is seen in linkage with HLA B62, which is recognized to be in linkage disequilibrium with HLA DRß1*04, which is more common in patients with extra-articular disease.29 In the second haplotype, TNFa6-TNFb5-TNFc1-TNFd4 microsatellites are associated with HLA DRß1*0401, which is in linkage disequilibrium with HLA B44 in the RA population, 23 and in studies from the Republic of Ireland is also linked with the TNFe3 microsatellite.26 Hence the variations seen in all these studies 26,28,29 may simply be present because of the MHC association. The third haplotype found in the RA population is the common combination of HLA A1-B8-DR3 that contains the TNFa2-TNFb3-TNFc1-TNFd1-TNFe3 microsatellites. It is therefore probable that the ‘TNF locus’ is inherited as part of individual haplotypes with the MHC Class I and II genes and, therefore, may not be directly implicated in development of RA. A recent comparative study has upheld this view, confirming that while there is an association between RA and the MHC Class II alleles, the influence of the TNF polymorphisms is not significant. 30

Other studies have addressed the relationship of TNF polymorphisms to clinical heterogeneity of RA. The diagnostic radiological feature in RA is development of erosions and the presence of narrowing of the joint space, which has been quantified by Sharp.31 Patients with the most severe joint disease develop early damage that progresses rapidly. Studies of the polymorphism site at position –238 within the TNF{alpha} promoter, show either a guanine (G) or an adenine (A) at this site. Of the three possible genotypes on the two chromosomes, the GG and GA are the most common. When scoring radiological damage in a prospective study over 3 years, patients with the GG genotype deteriorated at a faster rate on the Sharp score, whereas those with the GA genotype deteriorated more slowly.32 This effect is apparently independent of the MHC Class II alleles; in fact, when taken into account with the –238 GG genotype, the presence of HLA DR4, the OR for the presence of erosions in patients with both risk factors compared to patients who lack these factors was 11.1. Similar studies on this patient cohort have shown a similar association with the site at +489 (33), with the GG genotype being having the more severe erosive disease. Although comparable studies using the microsatellites are small in number, the presence of TNFa6 influences the effect of the shared epitope on the MHC. The erosion score and frequency of joint replacements were higher when TNFa6 was present in the presence of the shared epitope. 34 Although a link has been suggested,33 it remains to be established whether the G variant at the +489 is linked with the TNFa6 microsatellite. If it is, this suggests that TNF{alpha} gene polymorphisms are implicated in RA disease severity. Interestingly, the Manchester studies also implied that when two microsatellites TNFa6 and TNFa11 were present in one patient the erosion score was worse, suggesting a possible input to disease severity of the TNF polymorphism from the second chromosome. 33

Systemic lupus erythematosus
The situation in SLE is more complex. Not only is the disease rarer, but the diagnosis requires any four of eleven different ARA criteria,35 so the clinical variation in disease is far greater. In addition, SLE has a wide ethnic spectrum, with common manifestations differing by each ethnic subgroup. The genetic makeup at the MHC in each ethnic group is also different, and is further complicated by mixed ethnicity. Nevertheless, the MHC Class III region has been implicated in pathogenesis because of the frequency of the HLA A1 B8 DR3 extended haplotype in Caucasians36,37 which can incorporate either DQw1 or DQw2.38 In those of Afro-Caribbean extraction, the common haplotype contains B44 DR2 DQ6.39,40 The MHC Class III region is important because of the presence of the C4aQ0 null allele that has been identified in both ethnic groups.37, 41,42 The genome screening approach in Caucasian multiple-case families with SLE has also identified the MHC as an area of specific interest. 18,43

Initial examination of the ‘TNF locus’ showed an association with the LT{alpha}B*1 allele, which is found in linkage disequilibrium with the extended haplotype HLA A1 B8 DR3 DQ2. 44 Further studies showed that there is an increase in the frequency of the TNF{alpha} –308A in Caucasians45, 46 which is also part of this haplotype in non-Caucasians. This haplotype contains the microsatellite combination of TNFa2 TNFb3 TNFd2, and these are also more common in Caucasians with SLE,47, 48 suggesting no specific link between these alleles and SLE over and above that associated with the extended haplotype. However, two studies have implied that there may be more to the associations with the TNF {alpha} –308A allele in SLE. Firstly, the frequency of TNF {alpha} –308A was higher in African American SLE patients,49 and there is no association with DR3 in African Americans. Furthermore, this link is supported by the demonstration in a Dutch population of a higher odds ratios for TNF{alpha} –308A with SLE over and above that for DR3,50 suggesting that this allele may be an independent risk factor in Caucasians too.

Various studies have suggested an association between certain alleles in the ‘TNF locus’ and clinical features of SLE. The malar rash and anaemia are connected to the presence of the TNF{alpha} –308A in African Americans.49 In Greek patients, TNFa11 is more common in SLE patients with nephritis;48 similarly, photosensitivity and Raynaud's phenomenon were more common in TNFa2-TNFb3-TNFd2-positive UK patients.47 It remains to be seen whether it is the TNF{alpha} –308A or the HLA antigens coded for by the genes within the extended haplotype that is associated with antibodies against La/SS-B51 as originally suggested.45 Many of these studies are not sufficiently large to reach significance if corrected for multiple comparisons, and more extensive studies will be necessary to confirm these observations.

Ankylosing spondylitis
The genome-wide screening approach in AS families has confirmed that the MHC is important in AS development, much as would be expected from the known associations with HLA B27. 52 However, a recent study of monozygotic and dizygotic twins has claimed the disease risk attributable to B27 to be 16%,15 implying that the genetic association may extend beyond Class I. 16 Initial analyses of the MHC Class III region studied the SNP at position –308 in the promoter region of the TNF{alpha} gene and the Nco1 locus in the LT{alpha} gene, and failed to show an association at either locus. 53,54 However, larger analysis of patients and controls, together with a comparison of HLA B27 positive ‘normal donors’ confirmed no association between the Nco1 locus and AS, but showed a link with the TNF{alpha} –308.B*1 (G allele) in the AS patients, independent of HLA B27.55 One local study has confirmed this association, 56 but one based on patients from a larger geographical distribution has not.57

In studies examining the extra-spinal features of AS, the polymorphism at position –238 in the TNF{alpha} gene failed to demonstrate an association with anterior uveitis. 58 Although McGarry's study suggested a negative association between uveitis and the TNFa4 allele, 55 this study was insufficiently large to make significant links with different features of AS. Nevertheless, it will be of interest to assess the influence of this gene, particularly on uveitis, peripheral joint disease, and different disease severity markers, which it appears to influence in RA. This will require collaborative studies so as to gain appropriate numbers of patients.

Vasculitides
Several studies have examined the influence of MHC genes on the vasculitides, but because of the rarity of these diseases, all have examined small groups of patients. The first set studied Behcet's syndrome, where in Japanese and other patients, HLA B51 is more frequent in patients than in controls.59 Analysis of 102 Middle-Eastern Behcet's patients and 115 matched controls showed that the LT{alpha} Nco-1B*2 polymorphism containing the A base in the ‘TNF locus’ is linked with HLA-B51 in the normal population.60 However, the combination of HLA-B51 and LT{alpha}Nco-1B*2 was more commonly found in patients with complete blindness, implying that genes within the TNF locus may be implicated in disease severity in Behcet's syndrome.

By comparison, examination of the –308 polymorphism in the TNF {alpha} promoter in patients with Wegener's granulomatosis has failed to demonstrate any associations with this disease in patients from a variety of areas.61–63 Similarly, there were no associations observed with Kawasaki's disease, 64 and this despite the fact that the patients with significant coronary artery disease demonstrated increased production of TNF{alpha} after in vitro stimulation with a variety of antigens.

One study has examined patients with confirmed giant-cell arteritis (GCA) and those with polymyalgia rheumatica (PMR).65 The TNFa2 microsatellite was more common in GCA, over and above the links between HLA DRß1*0401 and HLA DRß1*0101 that are more common in GCA. In PMR patients, the TNFb3 microsatellite was present in excess in this population in the absence of an MHC association. These studies argue not for a causal role for the TNF locus in individual diseases, but rather for significance in different clinical features of disease in the PMR/GCA spectrum.


    Function of the polymorphisms in the TNF genes
 Top
 Introduction
 Polymorphisms in the TNF...
 Function of the polymorphisms...
 Conclusions
 References
 
The association studies between disease manifestations and TNF{alpha} polymorphisms shed no light on whether these variations have any specific function that might be important in disease pathogenesis. Stimulation of PBMCs from patients expressing HLA-DR3 and DR4 produced more TNF{alpha} than those from DR2-positive cases, showing that there is undoubtedly some genetic regulation of TNF{alpha} production related to the MHC.8 However it is tantalizingly difficult to obtain a consensus as to the relevance of each of the polymorphisms in the TNF{alpha} gene.

Data from in vitro culture experiments using PBMCs will depend on the stimulus applied. Both monocytes and T cells have the capability to produce TNF{alpha}, and it is likely that LPS will stimulate the monocytes more that T cells, and that PHA and PMA will activate the T cells more efficiently. Although the promoter region for TNF{alpha} is identical in each cell, it is possible that these regulatory sequences may respond differently, depending on which second messengers are activated by the external stimulus. Therefore, for example, the G/A polymorphism at position –308 in the TNF{alpha} promoter may be relevant to macrophage response but not following T-cell activation. In addition, because each cell contains two chromosomes, the influence of the DNA sequence of the second chromosome on the one of interest will always be difficult to quantify unless studies are performed in individuals shown to be homozygous at all the loci of interest.

Despite these inherent problems, various in vitro studies have been undertaken to establish whether individual polymorphisms can exert influence over TNF{alpha} production. Identical twins show consistent TNF {alpha} production from stimulated cultured PBMCs,66 implying a genetic regulation. Initial studies of the ‘TNF locus’ examined the Nco1 polymorphism site at position +368 in the coding region of the LT{alpha} gene.11 At this locus, the change from the common C base (64% in Caucasians) to the rarer A base leads to an increase in TNF production from monocytes after in vitro monocyte stimulation with LPS. 67 However, stimulation of T cells using PMA failed to show any variation in TNF{alpha} production dependent upon differences at this allele.11

Later studies by the same group confirmed the link between high TNF {alpha} production8 and DR3 and DR4, compared to lower than average TNF{alpha} production from monocytes with DR2 and DR5.68 However, in these studies the TNFa2 and the TNFc2 microsatellites were also linked with higher TNF{alpha} production. All these studies included small numbers of individuals, and usually failed to take into account the other variable sites in the vicinity. However, the presence of the TNFa2 microsatellite within the HLA A1 B8 DR3 haplotype, 22 recognized to be associated with high TNF{alpha} production, could possibly explain this link.

Few studies have compared TNF{alpha} production with the allele variation at position –308 in the TNF promoter. The position within the gene promoter makes this an attractive candidate to exert regulatory control. Recent studies have shown that in vitro the common G allele (TNF-308*1) is linked with reduced TNF{alpha} production by stimulated PBMCs from patients with chronic reactive arthritis, most of whom are HLA-B27-positive.69 These studies are in keeping with the observation that patients with the A allele (TNF-308*2) make more TNF{alpha} under those circumstances. The fact that TNF-308*2 is also part of the A1 B8 DR3 haplotype suggests that this site could also be important in the high TNF{alpha} production associated with this haplotype.

To overcome the problems with in vitro culture, an alternative approach has investigated the effect of the individual polymorphism on mRNA transcription. In these experiments, DNA is constructed containing the relevant polymorphism, together with a reporter gene which is used as the read-out system. It was first reported that the TNF{alpha} promoter containing the –308A allele produced up to six times more mRNA than the construct containing the gene containing the –308G allele.70 These data support the in vitro culture data from the AS patients. 69 Similarly, studies using transfected DNA containing the –308A allele in Jurkat (T cell) and U937 (macrophage) cell lines produced double the mRNA over cells containing the TNF{alpha} gene with the –308G allele.71 Again, this argues in favour of the presence of the –308A variant in the extended haplotype regulating TNF{alpha} production.

However, other studies using transfected DNA containing the different bases at position –308 found no difference to production of a reporter gene in a variety of cell lines.72 These studies were carried out in the presence or absence of the 3' untranslated region of the TNF{alpha} gene to exclude an effect of this region on TNF{alpha} transcription. Substitutions at –308 in three different mutants spanning across this site similarly exerted no effect on the ability to produce TNF{alpha} mRNA.72 The same laboratory has also shown no effect on TNF{alpha} mRNA production using stimulated monocytes or T cells of either variant at –308. 73 Similar analyses following substitutions at positions –238 and +489 within the TNF{alpha} gene failed to show any variation in mRNA production,33 despite the suggestion that the +489 polymorphism is linked with disease severity.32 It seems likely that there will be genetic control of TNF{alpha} production, and unlikely that this will be independent of variations with the TNF {alpha} gene itself. Unfortunately the differences between in vitro production data after cell culture and the analysis by genetic methods cannot be explained, and do little to clarify the role of the different polymorphisms in regulating TNF{alpha} production.

However, murine studies continue to confirm a role for regulation of TNF {alpha} production, with the NZB/NZW F1 mice having impaired ability to produce TNF{alpha}. In these mice, a promoter polymorphism within the TNF{alpha} gene may be important in TNF{alpha} regulation. However, reporter gene assays in macrophage cell lines failed to demonstrate any change in mRNA production between the possible variants at this site.74 It was only when these gene constructs were transfected with a second mutation to the 3'UTR region that the polymorphisms in the promoter region had any influence, and then only on protein synthesis and not mRNA production. This implies that a ‘double hit’ may be necessary where variations at both ends of the TNF{alpha} gene are necessary to alter protein synthesis. Unfortunately the studies in human cells lines investigating this hypothesis failed to show any difference in mRNA production after removal of the 3'UTR of the TNF{alpha} gene.72 It remains to be established whether these changes in human DNA structure have functional implications relating to control over TNF{alpha} protein production.


    Conclusions
 Top
 Introduction
 Polymorphisms in the TNF...
 Function of the polymorphisms...
 Conclusions
 References
 
The MHC Class III region is clearly relevant in autoimmune diseases. However, the conflicting results from published studies of association between any specific human autoimmune disease and genetic differences in the genes in the TNF{alpha} locus fail to show that the links are of major importance in pathogenesis. They simply show the importance of the size of the study population, and the strict collection of correct control populations in showing any statistically demonstrable effect of any gene on disease predisposition.

Nevertheless, the individual polymorphisms within the TNF{alpha} gene may be important in disease severity. If so, then it would be predicted that the high TNF{alpha} production associated with the TNF polymorphisms in the extended haplotype HLA A1 B8 DR3 should protect from glomerulonephritis in SLE, but none of the studies are large enough to address this issue adequately.45, 47–50 The RA data showing that erosion rate is related to the +489 polymorphism show that associations can be found, 32 and provide a rationale for continued study. However, large patient numbers (>250) were necessary in this study, confirming that links can be detected only if analyses are sufficiently powered.

One complication not yet addressed is that most studies are hospital-based, and thus automatically select for the most severely affected in any population. By failing to study mild disease, these may mask the effect of any one polymorphism in disease severity. Analysis of community based RA patients has suggested a role for the MHC Class II in development of erosions in those patients seronegative for rheumatoid factor.75 However, it remains to be established whether the variations within the TNF {alpha} gene are more relevant in prognosis in this cohort. If they confirm a role for TNF{alpha} polymorphisms in RA severity, this can only assist clinicians in planning appropriate protocols for treatment in the future.

The inconsistent data from the human in vitro studies further exacerbates the dilemma of the relevance of the genetic polymorphisms in the TNF locus. Nevertheless, murine studies clearly demonstrate the importance of variable TNF{alpha} production. Altering the TNF{alpha} allele from a low TNF producer in NZB/W F1 mice to a high secreting phenotype delayed the onset of renal disease. 76 However, even in these murine studies, it remains unclear how altering TNF production protects mice from glomerulonephritis, when the genome scanning techniques clearly show this as having a polygenic aetiology.

In order to fulfil Koch's postulates for each gene, it will be necessary to develop models that target each gene to establish its relevance. Transfer of DNA segments identified as being of interest in the genome scans of murine models of SLE77 into mice with a non-SLE background has identified regions linked with T- and B-cell dysregulation. Crossbreeding experiments using these single gene mutants have generated normal background mice containing more than one of these genes. Characterization of the clinical features of these ‘polygenic’ mice confirms that some combinations are important in autoantibody production, and some with glomerulonephritis.78 These experiments already provide useful models for examining clinical features and targeting therapeutic options. None has been generated so far using genes of interest in models of RA. 79

To clarify any associations of genes with clinical features or disease severity in human patients, much larger studies will be necessary. This requires collaborations between centres using objectively characterized patients similar to those for the genome screening techniques. In the meantime, examination of these artificially-created murine disease models generated with relevant sections of DNA seems the best way to study and clarify their potential involvement.


    Acknowledgments
 
Ms C. Ryder provided invaluable secretarial support. I am grateful to Ms F. McGarry who undertook the PCR, gel electrophoresis and radiographs necessary for this review. Financial support was provided by the Arthritis Research Campaign (ICAC grant SO590).


    Notes
 
Address correspondence to Dr M. Field, Centre For Rheumatic Diseases, University Department of Medicine, Glasgow Royal Infirmary, Alexandra Parade, Glasgow G31 2ER. e-mail: m.field{at}clinmed.gla.ac.uk Back


    References
 Top
 Introduction
 Polymorphisms in the TNF...
 Function of the polymorphisms...
 Conclusions
 References
 
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